Dataframe containing meta-information of pathways in database

Source: R/pathway_databases.R

Dataframe containing meta-information of pathways in database

get_pathway_info(
  query_species = "hsapiens",
  database_list = NULL,
  include_network_statistics = FALSE
)

Arguments

query_species

For which species

database_list

Which databases to query. Query all if `NULL`.

include_network_statistics

Compute some useful statistics per pathway. Takes longer!

Value

data frame with pathway meta information

Examples

head(get_pathway_info(database_list = c("kegg")))
#>   database pathway_id                             pathway_name
#> 1     kegg  hsa:00010             Glycolysis / Gluconeogenesis
#> 2     kegg  hsa:00020                Citrate cycle (TCA cycle)
#> 3     kegg  hsa:00030                Pentose phosphate pathway
#> 4     kegg  hsa:00040 Pentose and glucuronate interconversions
#> 5     kegg  hsa:00051          Fructose and mannose metabolism
#> 6     kegg  hsa:00052                     Galactose metabolism