General

Ibrahim, Bashar, Ksenia Arkhipova, Arno C. Andeweg, Susana Posada-Céspedes, François Enault, Arthur Gruber, Eugene V. Koonin, et al. 2018. “Bioinformatics Meets Virology: The European Virus Bioinformatics Center’s Second Annual Meeting.” Viruses 10 (5). https://doi.org/10.3390/v10050256.

Posada-Cespedes, Susana, David Seifert, and Niko Beerenwinkel. 2017. “Recent Advances in Inferring Viral Diversity from High-Throughput Sequencing Data.” Virus Research 239: 17–32. https://doi.org/10.1016/j.virusres.2016.09.016.

Use of V-pipe

Carlisle, Louisa A, Teja Turk, Katharina Kusejko, Karin J Metzner, Christine Leemann, Corinne D Schenkel, Nadine Bachmann, et al. 2019. “Viral Diversity Based on Next-Generation Sequencing of HIV-1 Provides Precise Estimates of Infection Recency and Time Since Infection.” The Journal of Infectious Diseases, April. https://doi.org/10.1093/infdis/jiz094.