Getting started

Table of Contents

Table of Contents

• How to get V-pipe
  • Available from
  • Learn how to install
• Next step

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How to get V-pipe

Here are the locations from which you can obtain V-pipe and information on how to install it from these sources.

Available from

V-pipe is available on and can be obtained from the following locations:

• using the installation script available on GitHub
• as Docker image
• listed on Snakemake Workflow Catalog and can be installed using the official workflow installer Snakedeploy

Learn how to install

Here are the relevant sections of the README to install V-pipe from the above sources:

• Installer script:
  • Using quick install script
  • we strong envourage beginners who aren’t used to neither conda nor snakemake to use this approach
  • this approach is also demonstrated step-by-step in our first tutorial, V-pipe Installation
• Docker image:
  • Using docker
• Snakemake Workflow Catalog:
  • Using snakedeploy

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Next step

To start using V-pipe, you can now refer to the documentation.

We strongly encourage you to check our tutorials, they cover installation of V-pipe and the first steps to get it running on virus data.