Visualize pathway enrichments as network.
plot_pareg_with_args(
x,
show_term_names = TRUE,
min_similarity = 0,
term_subset = NULL
)Arguments
- x
An object of class
pareg.- show_term_names
Whether to plot node labels.
- min_similarity
Don't plot edges for similarities below this value.
- term_subset
Subset of terms to show.
Value
ggplot object.
Examples
df_genes <- data.frame(
gene = paste("g", 1:20, sep = ""),
pvalue = c(
rbeta(10, .1, 1),
rbeta(10, 1, 1)
)
)
df_terms <- rbind(
data.frame(
term = "foo",
gene = paste("g", 1:10, sep = "")
),
data.frame(
term = "bar",
gene = paste("g", 11:20, sep = "")
)
)
fit <- pareg(df_genes, df_terms, max_iterations = 10)
plot(fit)
