Pathway enrichment using a regularized regression approach • pareg

Pathway enrichment computations using a regularized regression approach to incorporate inter-pathway relations in the statistical model.

Installation

Install the latest stable version from Bioconductor:

BiocManager::install("pareg")

Install the latest development version from GitHub:

remotes::install_github("cbg-ethz/pareg")

Project structure

.: R package
inst/scripts/: Snakemake workflows and other utilities

Dev notes

Update NAMESPACE and write man pages: Rscript -e "devtools::document()"
Format code: Rscript -e "styler::style_dir('.', transformers = biocthis::bioc_style())"