API Reference

The package is divided into several modules, corresponding to different utilities.

Quasimultinomial model

The quasimultinomial noise model, which corresponds to the high-level Covvfit utilities.
The API is available here.

Caution: There are public functions in this submodule, which are being refactored into other modules.

Dynamics

The growth models, linking model parameters to outcomes of idealised abundance. The API is available here.

Preprocessing

Data preprocessing utilities, used to load deconvoluted data into the model and reshape them into appropriate data formats. The API is available here.

Plotting

The plotting utilities. The API is available here.

Numeric

General numerical programming utilities. The API is available here.